Tree view for rid: , query ID: , database:

This tree was produced using BLAST pairwise alignments. more...

  Help:Tree method
Algorithm used to produce a tree from a given matrix of distances. For BLASTN or megaBLAST the Jukes-Cantor method is used to calculate the distances, for all other programs the Kimura method is used.
  Help:Sequence Label
Text used in the tree to describe the sequences. Blast Names are informal high level taxonomic categories. The color of the terminal node indicates the Blast Name of a sequence.
  Help:Max Seq Difference
Fraction of mismatching letters in the tree.This value is known as the "difference" and is used to calculate the "distance"between any two sequences in the alignment.The current method used to calculate a distance allows at most a maximum difference of 0.75.To see sequences not used in constructing the tree use the "Show removed sequences" link.

rectangle  slanted  radial  force  Mouse over an internal node for a subtree or alignment Xenopus laevis src homology collagen (Shc1), mRNAXenopus laevis src homology collagen, mRNA (cDNA clone MGC:98812 IMAGE:3400241), complete cdsPREDICTED: Monodelphis domestica similar to SHC (Src homology 2 domain containing) transforming protein 1 (LOC100016090), mRNAPREDICTED: Macaca mulatta similar to SHC (Src homology 2 domain containing) transforming protein 1 isoform p66Shc (LOC718982), mRNARhesus Macaque  BAC CH250-498O8 () complete sequenceH.sapiens shc gene, p66 isoformHomo sapiens SHC (Src homology 2 domain containing) transforming protein 1 (SHC1), transcript variant 1, mRNAH.sapiens SHC mRNAHuman p66shc (SHC) mRNA, complete cdsHomo sapiens mRNA for SHC transforming protein 1 variant, clone: HEP09014Homo sapiens cDNA clone IMAGE:4890240, containing frame-shift errorsHomo sapiens cDNA clone IMAGE:3161064, containing frame-shift errorsHomo sapiens SHC (Src homology 2 domain containing) transforming protein 1 (SHC1), transcript variant 2, mRNAHomo sapiens mRNA; cDNA DKFZp686L06171 (from clone DKFZp686L06171)Homo sapiens cDNA FLJ38850 fis, clone MESAN2010031, highly similar to SHC TRANSFORMING PROTEINHomo sapiens SHC (Src homology 2 domain containing) transforming protein 1, mRNA (cDNA clone MGC:39145 IMAGE:4896385), complete cdsHomo sapiens cDNA FLJ26504 fis, clone KDN07054, highly similar to SHC transforming proteinHomo sapiens mRNA; cDNA DKFZp686J19171 (from clone DKFZp686J19171)Homo sapiens mRNA for SHC (Src homology 2 domain containing) transforming protein 1 isoform p66Shc variant proteinHuman DNA sequence from clone RP11-307C12 on chromosome 1, complete sequencePREDICTED: Pan troglodytes SHC (Src homology 2 domain containing) transforming protein 1 (SHC1), mRNAPongo pygmaeus mRNA; cDNA DKFZp459K018 (from clone DKFZp459K018)Human DNA sequence from clone RP4-710L4 on chromosome Xq11.2-12, complete sequenceHomo sapiens SHC (Src homology 2 domain containing) transforming protein 1 pseudogene 1 (SHC1P1) on chromosome XHomo sapiens adaptor protein pseudogene, partial sequencePan troglodytes BAC clone CH251-481L4 from chromosome x, complete sequencePREDICTED: Pan troglodytes similar to SHC (Src homology 2 domain containing) transforming protein 1 (LOC473641), mRNAPan troglodytes adaptor protein (Shc) pseudogene, partial sequenceHomo sapiens chromosome 17, clone hRPC.882_C_2, complete sequenceBos taurus SHC (Src homology 2 domain containing) transforming protein 1 (SHC1), mRNAPREDICTED: Canis familiaris similar to src homology 2 domain-containing transforming protein C, transcript variant 2 (LOC490439), mRNAPREDICTED: Canis familiaris similar to src homology 2 domain-containing transforming protein C, transcript variant 1 (LOC490439), mRNAPREDICTED: Canis familiaris similar to src homology 2 domain-containing transforming protein C, transcript variant 4 (LOC490439), mRNARattus norvegicus src homology 2 domain-containing transforming protein C1 (Shc1), mRNAPREDICTED: Rattus norvegicus similar to src homology 2 domain-containing transforming protein C1 (LOC500206), mRNAPREDICTED: Rattus norvegicus similar to src homology 2 domain-containing transforming protein C (LOC500206), mRNAMus musculus cDNA, clone:Y0G0121E02, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000039110, based on BLAT searchMus musculus Shcp52 (Shc) mRNA, complete cdsMus musculus src homology collagen protein 66 kDa isoform gene, partial cdsMus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630204K04 product:src homology 2 domain-containing transforming protein C1, full insert sequenceMus musculus chromosome 3, clone RP24-178P12, complete sequenceMus musculus BAC clone RP23-137J12 from chromosome 3, complete sequenceMus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330027D01 product:src homology 2 domain-containing transforming protein C1, full insert sequenceMus musculus Shc1(query)PREDICTED: Mus musculus similar to src homology collagen protein 66 kDa isoform (LOC433158), mRNAPREDICTED: Mus musculus similar to src homology 2 domain-containing transforming protein C1 (LOC669532), mRNAPREDICTED: Mus musculus similar to src homology collagen protein 66 kDa isoform (LOC433158), mRNAPREDICTED: Mus musculus similar to src homology 2 domain-containing transforming protein C (LOC669542), mRNAMus musculus BAC clone RP23-166M23 from 18, complete sequenceMus musculus src homology 2 domain-containing transforming protein C1, mRNA (cDNA clone MGC:37600 IMAGE:4988907), complete cdsMus musculus src homology 2 domain-containing transforming protein C1 (Shc1), mRNAMus musculus strain C57BL/6J clone rp23-418c12 map 3, complete sequence
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