Tree view for rid:
6601F7XK012
, query ID:
lcl|1_21381
, database:
nr
This tree was produced using BLAST pairwise alignments.
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Tree method
Help:Tree method
Algorithm used to produce a tree from a given matrix of distances. For BLASTN or megaBLAST the Jukes-Cantor method is used to calculate the distances, for all other programs the Kimura method is used.
Sequence Label
Help:Sequence Label
Text used in the tree to describe the sequences. Blast Names are informal high level taxonomic categories. The color of the terminal node indicates the Blast Name of a sequence.
Max Seq Difference
Help:Max Seq Difference
Fraction of mismatching letters in the tree.This value is known as the "difference" and is used to calculate the "distance"between any two sequences in the alignment.The current method used to calculate a distance allows at most a maximum difference of 0.75.To see sequences not used in constructing the tree use the "Show removed sequences" link.
Fast Minimum Evolution
Neighbor Joining
Sequence ID
Taxonomic Name (if available)
Sequence Title (if available)
Blast Name(if available)
Sequence ID(Blast Name)
0.05
0.1
0.15
0.2
0.25
0.3
0.35
0.4
0.45
0.5
0.55
0.6
0.65
0.7
0.75
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slanted
radial
force
Show distance
Mouse over an internal node for a subtree or alignment
Blast names color map
unknown
rodents
primates
mammals
birds
Sequences with more than 0.75 difference removed from treeview
gb|AF268970.1
dbj|AK135341.1
emb|AL110092.1
dbj|AK181157.1
ref|NM_145946.2
gb|BC027836.1
dbj|AK219254.1
dbj|AK215702.1
dbj|AK207449.1
gb|U74651.1
gb|AF268972.1
dbj|AK199644.1
gb|AF268971.1
ref|XM_001092826.1
ref|XM_001093053.1
ref|XM_001092590.1
ref|XM_425079.2
gb|AF268973.1
ref|NM_018193.2
dbj|AK027564.1
dbj|AB058697.1
ref|XM_001166865.1
ref|XM_001166926.1
ref|XM_001167075.1
ref|XM_001166767.1
ref|XM_510581.2
ref|XM_001167020.1
ref|XM_001166991.1
ref|XM_001166960.1
gb|DQ285413.1
gb|DQ285412.1
ref|XM_600723.3
dbj|AK186656.1
dbj|AK204663.1
dbj|AK185475.1