Tree view for rid:
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This tree was produced using BLAST pairwise alignments.
Algorithm used to produce a tree from a given matrix of distances. For BLASTN or megaBLAST the Jukes-Cantor method is used to calculate the distances, for all other programs the Kimura method is used.
Text used in the tree to describe the sequences. Blast Names are informal high level taxonomic categories. The color of the terminal node indicates the Blast Name of a sequence.
Max Seq Difference
Help:Max Seq Difference
Fraction of mismatching letters in the tree.This value is known as the "difference" and is used to calculate the "distance"between any two sequences in the alignment.The current method used to calculate a distance allows at most a maximum difference of 0.75.To see sequences not used in constructing the tree use the "Show removed sequences" link.
Fast Minimum Evolution
Taxonomic Name (if available)
Sequence Title (if available)
Blast Name(if available)
Sequence ID(Blast Name)
Mouse over an internal node for a subtree or alignment
Blast names color map
Sequences with more than 0.75 difference removed from treeview